Package: imageData 0.1-62

imageData: Aids in Processing and Plotting Data from a Lemna-Tec Scananalyzer

Note that 'imageData' has been superseded by 'growthPheno'. The package 'growthPheno' incorporates all the functionality of 'imageData' and has functionality not available in 'imageData', but some 'imageData' functions have been renamed. The 'imageData' package is no longer maintained, but is retained for legacy purposes.

Authors:Chris Brien [aut, cre]

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imageData.pdf |imageData.html✨
imageData/json (API)

# Install 'imageData' in R:
install.packages('imageData', repos = c('https://briencj.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Datasets:
  • RiceRaw.dat - Data for an experiment to investigate a rice germplasm panel
  • cart.dat - A small data set to use in function examples
  • longi.dat - A small data set to use in function examples
  • longi.prime.dat - A small data set to use in function examples
  • raw.dat - A small data set to use in function examples

On CRAN:

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

3.18 score 38 scripts 274 downloads 4 mentions 29 exports 114 dependencies

Last updated 1 years agofrom:7829148d69. Checks:OK: 3 NOTE: 4. Indexed: yes.

TargetResultDate
Doc / VignettesOKNov 22 2024
R-4.5-winNOTENov 22 2024
R-4.5-linuxNOTENov 22 2024
R-4.4-winNOTENov 22 2024
R-4.4-macNOTENov 22 2024
R-4.3-winOKNov 22 2024
R-4.3-macOKNov 22 2024

Exports:AGRdiffanomanomPlotcalcLaggedcalcTimescorrPlotcumulatedesignFactorsfitSplinegetDatesimagetimesPlotimportExcelintervalGRaverageintervalGRdiffintervalPVAintervalValueCalculateintervalWUIlongiPlotlongitudinalPrimePGRprobeDFPVArcontribRGRdiffsplitContGRdiffsplitSplinessplitValueCalculatetwoLevelOpcreateWUI

Dependencies:abindbackportsbase64encbootbroombslibcachemcarcarDatacellrangercheckmatecliclustercolorspacecorrplotcowplotcpp11crayondaedata.tableDerivdigestdoBydplyrevaluatefansifarverfastmapfontawesomeforcatsforeignFormulafsgenericsGGallyggplot2ggpubrggrepelggsciggsignifggstatsgluegridExtragtablehighrHmischmshtmlTablehtmltoolshtmlwidgetsisobandjquerylibjsonliteknitrlabelinglatticelifecyclelme4magrittrMASSMatrixMatrixModelsmemoisemgcvmicrobenchmarkmimeminqamodelrmunsellnlmenloptrnnetnumDerivpatchworkpbkrtestpillarpkgconfigplyrpolynomprettyunitsprogresspurrrquantregR6rappdirsRColorBrewerRcppRcppEigenreadxlrematchreshaperlangrmarkdownrpartrstatixrstudioapisassscalesSparseMstringistringrsurvivaltibbletidyrtidyselecttinytextryCatchLogutf8vctrsviridisviridisLitewithrxfunyaml

imageData-manual

Rendered fromimageData-manual.pdf.asisusingR.rsp::asison Nov 22 2024.

Last update: 2019-05-15
Started: 2019-05-15

Readme and manuals

Help Manual

Help pageTopics
Aids in Processing and Plotting Data from a Lemna-Tec ScananalyzerimageData-package imageData
Tests if any values in a vector are anomalous in being outside specified limitsanom
Identifies anomalous individuals and produces longitudinal plots without them and with just themanomPlot
Replaces the values in a vector with the result of applying an operation to it and a lagged valuecalcLagged
Calculates for a set of times, the time intervals after an origin time and the position of each with in that timecalcTimes
Calculates and plots correlation matrices for a set of responsescorrPlot
Calculates the cumulative sum, ignoring the first element if exclude.1st is TRUEcumulate
Adds the factors and covariates for a blocked, split-plot designdesignFactors
A small data set to use in function examplescart.dat exampleData longi.dat longi.prime.dat raw.dat
Produce the fits from a natural cubic smoothing spline applied to a response in a 'data.frame'fitSpline
Forms a subset of 'responses' in 'data' that contains their values for the nominated timesgetDates
Calculates growth rates (AGR, PGR, RGRdiff) between pairs of values in a vectorAGRdiff GrowthRates PGR RGRdiff
Plots the position of a time within an interval against the interval for each cartimagetimesPlot
Imports an Excel imaging file and allows some renaming of variablesimportExcel
Calculates the growth rates for a specified time interval by taking weighted averages of growth rates for times within the intervalintervalGRaverage
Calculates the growth rates for a specified time intervalintervalGRdiff
Selects a subset of variables observed within a specified time interval using Principal Variable Analysis (PVA)intervalPVA
Calculates a single value that is a function of an individual's values for a response over a specified time intervalintervalValueCalculate
Calculates water use indices (WUI) over a specified time interval to a data.frameintervalWUI
Plots longitudinal data from a Lemna Tec ScananalyzerlongiPlot
Selects a set variables to be retained in a data frame of longitudinal datalongitudinalPrime
Compares, for a set of specified values of df, a response and the smooths of it, possibly along with growth rates calculated from the smoothsprobeDF
Selects a subset of variables using Principal Variable Analysis (PVA)PVA
Computes a measure of how correlated each variable in a set is with the other variable, conditional on a nominated subset of themrcontrib
Data for an experiment to investigate a rice germplasm panelRiceRaw.dat
Adds the growth rates calculated continuously over time for subsets of a response to a 'data.frame'splitContGRdiff
Adds the fits after fitting a natural cubic smoothing spline to subsets of a response to a 'data.frame'splitSplines
Calculates a single value that is a function of an individual's values for a responsesplitValueCalculate
Creates a data.frame formed by applying, for each response, a binary operation to the paired values of two different treatmentstwoLevelOpcreate
Calculates the Water Use Index (WUI)WUI