Package: imageData 0.1-62

imageData: Aids in Processing and Plotting Data from a Lemna-Tec Scananalyzer

Note that 'imageData' has been superseded by 'growthPheno'. The package 'growthPheno' incorporates all the functionality of 'imageData' and has functionality not available in 'imageData', but some 'imageData' functions have been renamed. The 'imageData' package is no longer maintained, but is retained for legacy purposes.

Authors:Chris Brien [aut, cre]

imageData_0.1-62.tar.gz
imageData_0.1-62.zip(r-4.5)imageData_0.1-62.zip(r-4.4)imageData_0.1-62.zip(r-4.3)
imageData_0.1-62.tgz(r-4.4-any)imageData_0.1-62.tgz(r-4.3-any)
imageData_0.1-62.tar.gz(r-4.5-noble)imageData_0.1-62.tar.gz(r-4.4-noble)
imageData_0.1-62.tgz(r-4.4-emscripten)imageData_0.1-62.tgz(r-4.3-emscripten)
imageData.pdf |imageData.html✨
imageData/json (API)

# Install 'imageData' in R:

install.packages('imageData', repos = c('https://briencj.r-universe.dev', 'https://cloud.r-project.org'))

Datasets:

RiceRaw.dat - Data for an experiment to investigate a rice germplasm panel
cart.dat - A small data set to use in function examples
longi.dat - A small data set to use in function examples
longi.prime.dat - A small data set to use in function examples
raw.dat - A small data set to use in function examples

On CRAN:

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

29 exports 1.31 score 123 dependencies 4 mentions 38 scripts 344 downloads

Last updated 1 years agofrom:7829148d69. Checks:OK: 3 NOTE: 4. Indexed: yes.

Target	Result	Date
Doc / Vignettes	OK	Aug 24 2024
R-4.5-win	NOTE	Aug 24 2024
R-4.5-linux	NOTE	Aug 24 2024
R-4.4-win	NOTE	Aug 24 2024
R-4.4-mac	NOTE	Aug 24 2024
R-4.3-win	OK	Aug 24 2024
R-4.3-mac	OK	Aug 24 2024

Exports:AGRdiff anom anomPlot calcLagged calcTimes corrPlot cumulate designFactors fitSpline getDates imagetimesPlot importExcel intervalGRaverage intervalGRdiff intervalPVA intervalValueCalculate intervalWUI longiPlot longitudinalPrime PGR probeDF PVA rcontrib RGRdiff splitContGRdiff splitSplines splitValueCalculate twoLevelOpcreate WUI

Dependencies:abind backports base64enc bit bit64 boot broom broom.helpers bslib cachem car carData cellranger checkmate cli clipr cluster colorspace corrplot cowplot cpp11 crayon dae data.table Deriv digest doBy dplyr evaluate fansi farver fastmap fontawesome forcats foreign Formula fs generics GGally ggplot2 ggpubr ggrepel ggsci ggsignif ggstats glue gridExtra gtable haven highr Hmisc hms htmlTable htmltools htmlwidgets isoband jquerylib jsonlite knitr labeling labelled lattice lifecycle lme4 magrittr MASS Matrix MatrixModels memoise mgcv microbenchmark mime minqa modelr munsell nlme nloptr nnet numDeriv patchwork pbkrtest pillar pkgconfig plyr polynom prettyunits progress purrr quantreg R6 rappdirs RColorBrewer Rcpp RcppEigen readr readxl rematch reshape rlang rmarkdown rpart rstatix rstudioapi sass scales SparseM stringi stringr survival tibble tidyr tidyselect tinytex tryCatchLog tzdb utf8 vctrs viridis viridisLite vroom withr xfun yaml

imageData-manual

Rendered fromimageData-manual.pdf.asisusingR.rsp::asison Aug 24 2024.

Last update: 2019-05-15
Started: 2019-05-15

Citation

Readme and manuals

Help Manual

Help page	Topics
Aids in Processing and Plotting Data from a Lemna-Tec Scananalyzer	imageData-package imageData
Tests if any values in a vector are anomalous in being outside specified limits	anom
Identifies anomalous individuals and produces longitudinal plots without them and with just them	anomPlot
Replaces the values in a vector with the result of applying an operation to it and a lagged value	calcLagged
Calculates for a set of times, the time intervals after an origin time and the position of each with in that time	calcTimes
Calculates and plots correlation matrices for a set of responses	corrPlot
Calculates the cumulative sum, ignoring the first element if exclude.1st is TRUE	cumulate
Adds the factors and covariates for a blocked, split-plot design	designFactors
A small data set to use in function examples	cart.dat exampleData longi.dat longi.prime.dat raw.dat
Produce the fits from a natural cubic smoothing spline applied to a response in a 'data.frame'	fitSpline
Forms a subset of 'responses' in 'data' that contains their values for the nominated times	getDates
Calculates growth rates (AGR, PGR, RGRdiff) between pairs of values in a vector	AGRdiff GrowthRates PGR RGRdiff
Plots the position of a time within an interval against the interval for each cart	imagetimesPlot
Imports an Excel imaging file and allows some renaming of variables	importExcel
Calculates the growth rates for a specified time interval by taking weighted averages of growth rates for times within the interval	intervalGRaverage
Calculates the growth rates for a specified time interval	intervalGRdiff
Selects a subset of variables observed within a specified time interval using Principal Variable Analysis (PVA)	intervalPVA
Calculates a single value that is a function of an individual's values for a response over a specified time interval	intervalValueCalculate
Calculates water use indices (WUI) over a specified time interval to a data.frame	intervalWUI
Plots longitudinal data from a Lemna Tec Scananalyzer	longiPlot
Selects a set variables to be retained in a data frame of longitudinal data	longitudinalPrime
Compares, for a set of specified values of df, a response and the smooths of it, possibly along with growth rates calculated from the smooths	probeDF
Selects a subset of variables using Principal Variable Analysis (PVA)	PVA
Computes a measure of how correlated each variable in a set is with the other variable, conditional on a nominated subset of them	rcontrib
Data for an experiment to investigate a rice germplasm panel	RiceRaw.dat
Adds the growth rates calculated continuously over time for subsets of a response to a 'data.frame'	splitContGRdiff
Adds the fits after fitting a natural cubic smoothing spline to subsets of a response to a 'data.frame'	splitSplines
Calculates a single value that is a function of an individual's values for a response	splitValueCalculate
Creates a data.frame formed by applying, for each response, a binary operation to the paired values of two different treatments	twoLevelOpcreate
Calculates the Water Use Index (WUI)	WUI