{ "_id": "6a1d65b31d7bb097a0a4ca14", "Package": "imageData", "Version": "0.1.64", "Date": "2025-07-31", "Title": "Aids in Processing and Plotting Data from a Lemna-Tec\nScananalyzer", "Authors@R": "person(\"Chris\",\"Brien\", role = c(\"aut\",\"cre\"),\ncomment = c(ORCID = \"0000-0003-0581-1817\"),\nemail = \"chris.brien@adelaide.edu.au\")", "VignetteBuilder": "R.rsp", "Description": "Note that 'imageData' has been superseded by\n'growthPheno'. The package 'growthPheno' incorporates all the\nfunctionality of 'imageData' and has functionality not\navailable in 'imageData', but some 'imageData' functions have\nbeen renamed. The 'imageData' package is no longer maintained,\nbut is retained for legacy purposes.", "License": "GPL (>= 2)", "URL": "http://chris.brien.name", "RoxygenNote": "5.0.1", "NeedsCompilation": "no", "Packaged": { "Date": "2026-06-01 10:35:50 UTC", "User": "root" }, "Author": "Chris Brien [aut, cre] (ORCID:\n)", "Maintainer": "Chris Brien ", "Config/pak/sysreqs": "cmake make libicu-dev libuv1-dev libssl-dev", "Repository": "https://briencj.r-universe.dev", "Date/Publication": "2025-07-31 08:47:36 UTC", "RemoteUrl": "https://github.com/cran/imageData", "RemoteRef": "HEAD", "RemoteSha": "c2e987ea3afe3a0c98830d6d450efe85a60aa824", "MD5sum": "9f085293b59e6147ba225567cb046000", "_user": "briencj", "_type": "src", "_file": "imageData_0.1.64.tar.gz", "_fileid": "207453bc5ff9f84a07cb2a90ce233b1abdf1989a37e07aecaaf233d0ba07709a", "_filesize": 1684729, "_sha256": "207453bc5ff9f84a07cb2a90ce233b1abdf1989a37e07aecaaf233d0ba07709a", "_created": "2026-06-01T10:35:50.000Z", "_published": "2026-06-01T10:57:55.720Z", "_distro": "noble", "_jobs": [ { "job": 78834362845, "time": 153, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "7329319681" }, { "job": 78834362836, "time": 221, "config": "linux-release-x86_64", "r": "4.6.0", "check": "OK", "artifact": "7329340443" }, { "job": 78834362925, "time": 122, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "OK", "artifact": "7329679941" }, { "job": 78834362837, "time": 108, "config": "macos-release-arm64", "r": "4.6.0", "check": "OK", "artifact": "7329464865" }, { "job": 78833811084, "time": 221, "config": "source", "r": "4.6.0", "check": "OK", "artifact": "7329271787" }, { "job": 78834362828, "time": 164, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "7329322528" }, { "job": 78834362873, "time": 131, "config": "windows-devel", "r": "4.7.0", "check": "OK", "artifact": "7329312797" }, { "job": 78834362926, "time": 130, "config": "windows-oldrel", "r": "4.5.3", "check": "OK", "artifact": "7329312236" }, { "job": 78834362864, "time": 137, "config": "windows-release", "r": "4.6.0", "check": "OK", "artifact": "7329314452" } ], "_buildurl": "https://github.com/r-universe/briencj/actions/runs/26749558830", "_status": "success", "_host": "GitHub-Actions", "_upstream": "https://github.com/cran/imageData", "_commit": { "id": "c2e987ea3afe3a0c98830d6d450efe85a60aa824", "author": "Chris Brien ", "committer": "cran-robot ", "message": "version 0.1.64\n", "time": 1753951656 }, "_maintainer": { "name": "Chris Brien", "email": "chris.brien@adelaide.edu.au", "login": "briencj", "orcid": "0000-0003-0581-1817", "description": "", "uuid": 12837653 }, "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 3.1.0", "role": "Depends" }, { "package": "dae", "role": "Imports" }, { "package": "ggplot2", "role": "Imports" }, { "package": "stats", "role": "Imports" }, { "package": "readxl", "role": "Imports" }, { "package": "Hmisc", "role": "Imports" }, { "package": "GGally", "role": "Imports" }, { "package": "RColorBrewer", "role": "Imports" }, { "package": "reshape", "role": "Imports" }, { "package": "grid", "role": "Imports" }, { "package": "testthat", "role": "Suggests" }, { "package": "R.rsp", "role": "Suggests" } ], "_owner": "cran", "_selfowned": true, "_usedby": 0, "_updates": [ { "week": "2025-31", "n": 1 } ], "_tags": [ { "name": "0.1.64", "date": "2025-07-31" } ], "_stars": 0, "_contributors": [ { "user": "briencj", "count": 4, "uuid": 12837653 } ], "_userbio": { "uuid": 12837653, "type": "user", "name": "Chris Brien" }, "_downloads": { "count": 186, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/imageData" }, "_mentions": 4, "_searchresults": 56, "_rbuild": "4.6.0", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/imageData.html", "manual.pdf" ], "_realowner": "briencj", "_cranurl": false, "_releases": [ { "version": "0.1-21", "date": "2016-05-16" }, { "version": "0.1-26", "date": "2016-10-07" }, { "version": "0.1-41", "date": "2017-12-03" }, { "version": "0.1-50", "date": "2018-06-11" }, { "version": "0.1-59", "date": "2019-05-15" }, { "version": "0.1-60", "date": "2020-03-22" }, { "version": "0.1-61", "date": "2021-01-11" }, { "version": "0.1-62", "date": "2023-08-24" }, { "version": "0.1.64", "date": "2025-08-01" } ], "_exports": [ "AGRdiff", "anom", "anomPlot", "calcLagged", "calcTimes", "corrPlot", "cumulate", "designFactors", "fitSpline", "getDates", "imagetimesPlot", "importExcel", "intervalGRaverage", "intervalGRdiff", "intervalPVA", "intervalValueCalculate", "intervalWUI", "longiPlot", "longitudinalPrime", "PGR", "probeDF", "PVA", "rcontrib", "RGRdiff", "splitContGRdiff", "splitSplines", "splitValueCalculate", "twoLevelOpcreate", "WUI" ], "_datasets": [ { "name": "cart.dat", "title": "A small data set to use in function examples", "object": "exampleData", "file": "exampleData.rda", "class": [ "data.frame" ], "fields": [ "Smarthouse", "Lane", "Position", "Snapshot.ID.Tag", "xPosn", "xMainPosn", "Zones", "xZones", "SHZones", "ZLane", "ZMainplots", "Subplots", "Genotype.ID", "Treatment.1" ], "rows": 20, "table": true, "tojson": true }, { "name": "longi.dat", "title": "A small data set to use in function examples", "object": "exampleData", "file": "exampleData.rda", "class": [ "data.frame" ], "fields": [ "Snapshot.ID.Tag", "Days", "Days.diffs", "Area.smooth", "xDays", "Area", "Smarthouse", "Lane", "Position", "xPosn", "Reps", "Snapshot.Time.Stamp", "Hour", "Zones", "xZones", "SHZones", "ZLane", "ZMainplots", "Subplots", "xMainPosn", "Genotype.ID", "Treatment.1", "Weight.Before", "Weight.After", "Water.Amount", "Water.Loss", "Area.SV", "Area.TV", "Area.SV1", "Area.SV2", "Image.Biomass", "Max.Height", "Max.Dist.Above.Horizon.Line.SV1", "Max.Dist.Above.Horizon.Line.SV2", "Density", "Volume", "Centre.Mass", "Center.Of.Mass.Y.SV1", "Center.Of.Mass.Y.SV2", "Convex.Hull.SV", "Convex.Hull.TV", "Convex.Hull.Area.TV", "Convex.Hull.Area.SV1", "Convex.Hull.Area.SV2", "Boundary.Points.To.Area.Ratio.SV1", "Boundary.Points.To.Area.Ratio.SV2", "Boundary.Points.To.Area.Ratio.TV", "Compactness.SV1", "Compactness.SV2", "Compactness.SV", "Compactness.TV", "Caliper.Length.SV1", "Caliper.Length.SV2", "Caliper.Length.TV", "Days.after.Salting", "Area.AGR", "Area.RGR", "Area.WUE", "WUE.cum", "Water.Loss.Cum", "Water.Loss.smooth", "Area.smooth.AGR", "Area.smooth.RGR" ], "rows": 280, "table": true, "tojson": true }, { "name": "longi.prime.dat", "title": "A small data set to use in function examples", "object": "exampleData", "file": "exampleData.rda", "class": [ "data.frame" ], "fields": [ "Smarthouse", "Lane", "Position", "Days", "Snapshot.ID.Tag", "xPosn", "Reps", "Snapshot.Time.Stamp", "Hour", "xDays", "Genotype.ID", "Treatment.1", "Weight.Before", "Weight.After", "Water.Amount", "Water.Loss", "Area", "Area.SV", "Area.TV", "Area.SV1", "Area.SV2", "Image.Biomass", "Max.Height", "Max.Dist.Above.Horizon.Line.SV1", "Max.Dist.Above.Horizon.Line.SV2", "Density", "Volume", "Centre.Mass", "Center.Of.Mass.Y.SV1", "Center.Of.Mass.Y.SV2", "Convex.Hull.SV", "Convex.Hull.TV", "Convex.Hull.Area.TV", "Convex.Hull.Area.SV1", "Convex.Hull.Area.SV2", "Boundary.Points.To.Area.Ratio.SV1", "Boundary.Points.To.Area.Ratio.SV2", "Boundary.Points.To.Area.Ratio.TV", "Compactness.SV1", "Compactness.SV2", "Compactness.SV", "Compactness.TV", "Caliper.Length.SV1", "Caliper.Length.SV2", "Caliper.Length.TV" ], "rows": 280, "table": true, "tojson": true }, { "name": "raw.dat", "title": "A small data set to use in function examples", "object": "exampleData", "file": "exampleData.rda", "class": [ "data.frame" ], "fields": [ "Row.No", "Snapshot.ID.Tag", "Snapshot.Time.Stamp", "Time.after.Planting..d.", "Smarthouse", "Lane", "Position", "Genotype.ID", "Treatment.1", "Treatment.2", "Weight.Before", "Weight.After", "Water.Amount", "Projected.Shoot.Area..pixels.", "Area.SV1", "Boundary.Points.To.Area.Ratio.SV1", "Caliper.Length.SV1", "Center.Of.Mass.Y.SV1", "Compactness.SV1", "Convex.Hull.Area.SV1", "Max.Dist.Above.Horizon.Line.SV1", "Area.SV2", "Boundary.Points.To.Area.Ratio.SV2", "Caliper.Length.SV2", "Center.Of.Mass.Y.SV2", "Compactness.SV2", "Convex.Hull.Area.SV2", "Max.Dist.Above.Horizon.Line.SV2", "Area.TV", "Boundary.Points.To.Area.Ratio.TV", "Caliper.Length.TV", "Compactness.TV", "Convex.Hull.Area.TV" ], "rows": 280, "table": true, "tojson": true }, { "name": "RiceRaw.dat", "title": "Data for an experiment to investigate a rice germplasm panel", "object": "RiceRaw.dat", "file": "RiceRaw.dat.rda", "class": [ "data.frame" ], "fields": [ "Row.No", "Snapshot.ID.Tag", "Snapshot.Time.Stamp", "Time.after.Planting..d.", "Smarthouse", "Lane", "Position", "Genotype.ID", "Treatment.1", "Treatment.2", "Weight.Before", "Weight.After", "Water.Amount", "Projected.Shoot.Area..pixels.", "Area.SV1", "Boundary.Points.To.Area.Ratio.SV1", "Caliper.Length.SV1", "Center.Of.Mass.Y.SV1", "Compactness.SV1", "Convex.Hull.Area.SV1", "Max.Dist.Above.Horizon.Line.SV1", "Area.SV2", "Boundary.Points.To.Area.Ratio.SV2", "Caliper.Length.SV2", "Center.Of.Mass.Y.SV2", "Compactness.SV2", "Convex.Hull.Area.SV2", "Max.Dist.Above.Horizon.Line.SV2", "Area.TV", "Boundary.Points.To.Area.Ratio.TV", "Caliper.Length.TV", "Compactness.TV", "Convex.Hull.Area.TV" ], "rows": 14784, "table": true, "tojson": true } ], "_help": [ { "page": "imageData-pkg", "title": "Aids in Processing and Plotting Data from a Lemna-Tec Scananalyzer", "topics": [ "imageData-package", "imageData" ] }, { "page": "anom", "title": "Tests if any values in a vector are anomalous in being outside specified limits", "topics": [ "anom" ] }, { "page": "anomPlot", "title": "Identifies anomalous individuals and produces longitudinal plots without them and with just them", "topics": [ "anomPlot" ] }, { "page": "calcLagged", "title": "Replaces the values in a vector with the result of applying an operation to it and a lagged value", "topics": [ "calcLagged" ] }, { "page": "calcTimes", "title": "Calculates for a set of times, the time intervals after an origin time and the position of each with in that time", "topics": [ "calcTimes" ] }, { "page": "corrPlot", "title": "Calculates and plots correlation matrices for a set of responses", "topics": [ "corrPlot" ] }, { "page": "cumulate", "title": "Calculates the cumulative sum, ignoring the first element if exclude.1st is TRUE", "topics": [ "cumulate" ] }, { "page": "designFactors", "title": "Adds the factors and covariates for a blocked, split-plot design", "topics": [ "designFactors" ] }, { "page": "exampleData", "title": "A small data set to use in function examples", "topics": [ "cart.dat", "exampleData", "longi.dat", "longi.prime.dat", "raw.dat" ] }, { "page": "fitSpline", "title": "Produce the fits from a natural cubic smoothing spline applied to a response in a 'data.frame'", "topics": [ "fitSpline" ] }, { "page": "getDates", "title": "Forms a subset of 'responses' in 'data' that contains their values for the nominated times", "topics": [ "getDates" ] }, { "page": "GrowthRates", "title": "Calculates growth rates (AGR, PGR, RGRdiff) between pairs of values in a vector", "topics": [ "AGRdiff", "GrowthRates", "PGR", "RGRdiff" ] }, { "page": "imagetimesPlot", "title": "Plots the position of a time within an interval against the interval for each cart", "topics": [ "imagetimesPlot" ] }, { "page": "importExcel", "title": "Imports an Excel imaging file and allows some renaming of variables", "topics": [ "importExcel" ] }, { "page": "intervalGRaverage", "title": "Calculates the growth rates for a specified time interval by taking weighted averages of growth rates for times within the interval", "topics": [ "intervalGRaverage" ] }, { "page": "intervalGRdiff", "title": "Calculates the growth rates for a specified time interval", "topics": [ "intervalGRdiff" ] }, { "page": "intervalPVA", "title": "Selects a subset of variables observed within a specified time interval using Principal Variable Analysis (PVA)", "topics": [ "intervalPVA" ] }, { "page": "intervalValueCalculate", "title": "Calculates a single value that is a function of an individual's values for a response over a specified time interval", "topics": [ "intervalValueCalculate" ] }, { "page": "intervalWUI", "title": "Calculates water use indices (WUI) over a specified time interval to a data.frame", "topics": [ "intervalWUI" ] }, { "page": "longiPlot", "title": "Plots longitudinal data from a Lemna Tec Scananalyzer", "topics": [ "longiPlot" ] }, { "page": "longitudinalPrime", "title": "Selects a set variables to be retained in a data frame of longitudinal data", "topics": [ "longitudinalPrime" ] }, { "page": "probeDF", "title": "Compares, for a set of specified values of df, a response and the smooths of it, possibly along with growth rates calculated from the smooths", "topics": [ "probeDF" ] }, { "page": "PVA", "title": "Selects a subset of variables using Principal Variable Analysis (PVA)", "topics": [ "PVA" ] }, { "page": "rcontrib", "title": "Computes a measure of how correlated each variable in a set is with the other variable, conditional on a nominated subset of them", "topics": [ "rcontrib" ] }, { "page": "RiceRaw.dat", "title": "Data for an experiment to investigate a rice germplasm panel", "topics": [ "RiceRaw.dat" ] }, { "page": "splitContGRdiff", "title": "Adds the growth rates calculated continuously over time for subsets of a response to a 'data.frame'", "topics": [ "splitContGRdiff" ] }, { "page": "splitSplines", "title": "Adds the fits after fitting a natural cubic smoothing spline to subsets of a response to a 'data.frame'", "topics": [ "splitSplines" ] }, { "page": "splitValueCalculate", "title": "Calculates a single value that is a function of an individual's values for a response", "topics": [ "splitValueCalculate" ] }, { "page": "twoLevelOpcreate", "title": "Creates a data.frame formed by applying, for each response, a binary operation to the paired values of two different treatments", "topics": [ "twoLevelOpcreate" ] }, { "page": "WUI", "title": "Calculates the Water Use Index (WUI)", "topics": [ "WUI" ] } ], "_rundeps": [ "abind", "backports", "base64enc", "boot", "broom", "bslib", "cachem", "car", "carData", "cellranger", "checkmate", "cli", "cluster", "colorspace", "corrplot", "cowplot", "cpp11", "crayon", "dae", "data.table", "Deriv", "digest", "doBy", "dplyr", "evaluate", "farver", "fastmap", "fontawesome", "forcats", "forecast", "foreign", "Formula", "fracdiff", "fs", "generics", "GGally", "ggplot2", "ggpubr", "ggrepel", "ggsci", "ggsignif", "ggstats", "glue", "gridExtra", "gtable", "highr", "Hmisc", "hms", "htmlTable", "htmltools", "htmlwidgets", "isoband", "jquerylib", "jsonlite", "knitr", "labeling", "lattice", "lifecycle", "lme4", "lmtest", "magrittr", "MASS", "Matrix", "MatrixModels", "memoise", "mgcv", "microbenchmark", "mime", "minqa", "modelr", "nlme", "nloptr", "nnet", "numDeriv", "patchwork", "pbkrtest", "pillar", "pkgconfig", "plyr", "polynom", "prettyunits", "progress", "purrr", "quantreg", "R6", "rappdirs", "rbibutils", "RColorBrewer", "Rcpp", "RcppArmadillo", "RcppEigen", "Rdpack", "readxl", "reformulas", "rematch", "reshape", "rlang", "rmarkdown", "rpart", "rstatix", "rstudioapi", "S7", "sass", "scales", "SparseM", "stringi", "stringr", "survival", "tibble", "tidyr", "tidyselect", "timeDate", "tinytex", "tryCatchLog", "urca", "utf8", "vctrs", "viridisLite", "withr", "xfun", "yaml", "zoo" ], "_vignettes": [ { "source": "imageData-manual.pdf.asis", "filename": "imageData-manual.pdf", "title": "imageData-manual", "engine": "R.rsp::asis", "headings": [], "created": "2019-05-15 12:50:02", "modified": "2019-05-15 12:50:02", "commits": 1 } ], "_score": 3.3502480183341627, "_indexed": true, "_nocasepkg": "imagedata", "_universes": [ "briencj" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "0.1.64", "date": "2026-06-01T10:38:06.000Z", "distro": "noble", "commit": "c2e987ea3afe3a0c98830d6d450efe85a60aa824", "fileid": "541e24f7d12eca03987b2db467391f79a1328ba1d03a864ceb23edacb7f96eb4", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/briencj/actions/runs/26749558830" }, { "r": "4.6.0", "os": "linux", "version": "0.1.64", "date": "2026-06-01T10:39:06.000Z", "distro": "noble", "commit": "c2e987ea3afe3a0c98830d6d450efe85a60aa824", "fileid": "ecf2fad016ecb348709c715a58d901561da5069b0f591d1ef5fa29bf97293661", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/briencj/actions/runs/26749558830" }, { "r": "4.5.3", "os": "mac", "version": "0.1.64", "date": "2026-06-01T10:57:01.000Z", "commit": "c2e987ea3afe3a0c98830d6d450efe85a60aa824", "fileid": "74d07a3f8482497059f857631cbc9d725bd267007af685fbc83bd0c6d554aed1", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/briencj/actions/runs/26749558830" }, { "r": "4.6.0", "os": "mac", "version": "0.1.64", "date": "2026-06-01T10:45:57.000Z", "commit": "c2e987ea3afe3a0c98830d6d450efe85a60aa824", "fileid": "1ba30cfe36b7e5c9fb109bf6737678aa3da3ef299cdb9d8a889124dcf03cb1ae", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/briencj/actions/runs/26749558830" }, { "r": "4.6.0", "os": "wasm", "version": "0.1.64", "date": "2026-06-01T10:38:54.000Z", "commit": "c2e987ea3afe3a0c98830d6d450efe85a60aa824", "fileid": "ed1c95e47696f619d91d1ab7705d5ca353cb198ad9ab814e48cf46e9fcdae66d", "status": "success", "buildurl": "https://github.com/r-universe/briencj/actions/runs/26749558830" }, { "r": "4.7.0", "os": "win", "version": "0.1.64", "date": "2026-06-01T10:37:30.000Z", "commit": "c2e987ea3afe3a0c98830d6d450efe85a60aa824", "fileid": "a3b62d357915913df3eb2b9aef944505dc82271cb69a9113e8059a95b09f0801", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/briencj/actions/runs/26749558830" }, { "r": "4.5.3", "os": "win", "version": "0.1.64", "date": "2026-06-01T10:37:34.000Z", "commit": "c2e987ea3afe3a0c98830d6d450efe85a60aa824", "fileid": "9efe9ec2f023c229548954bd2ea1bad934bebc446b9ecce201d99d95d6a842a0", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/briencj/actions/runs/26749558830" }, { "r": "4.6.0", "os": "win", "version": "0.1.64", "date": "2026-06-01T10:37:30.000Z", "commit": "c2e987ea3afe3a0c98830d6d450efe85a60aa824", "fileid": "079461d8883d0b2b0928d7250f802a949fe345993778b59ddf764487df6059f9", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/briencj/actions/runs/26749558830" } ] }