{
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"Version": "3.2.33",
"Date": "2025-10-31",
"Title": "Functions Useful in the Design and ANOVA of Experiments",
"Authors@R": "person(\"Chris\",\"Brien\", role = c(\"aut\",\"cre\"),\ncomment = c(ORCID = \"0000-0003-0581-1817\"),\nemail = \"chris.brien@adelaide.edu.au\")",
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"Description": "The content falls into the following groupings: (i) Data,\n(ii) Factor manipulation functions, (iii) Design functions,\n(iv) ANOVA functions, (v) Matrix functions, (vi) Projector and\ncanonical efficiency functions, and (vii) Miscellaneous\nfunctions. There is a vignette describing how to use the design\nfunctions for randomizing and assessing designs available as a\nvignette called 'DesignNotes'. The ANOVA functions facilitate\nthe extraction of information when the 'Error' function has\nbeen used in the call to 'aov'. The package 'dae' can also be\ninstalled from .",
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"URL": "http://chris.brien.name",
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"efficiencies",
"efficiencies.p2canon",
"efficiencies.pcanon",
"efficiency.criteria",
"elements",
"extab",
"fac.ar1mat",
"fac.combine",
"fac.divide",
"fac.gen",
"fac.genfactors",
"fac.match",
"fac.meanop",
"fac.multinested",
"fac.nested",
"fac.recast",
"fac.recode",
"fac.split",
"fac.sumop",
"fac.uncombine",
"fac.uselogical",
"fac.vcmat",
"fitted.aovlist",
"fitted.errors",
"get.daeRNGkind",
"get.daeTolerance",
"harmonic.mean",
"interaction.ABC.plot",
"is.allzero",
"is.projector",
"makeLevsPadNums",
"marginality",
"marginality.pcanon",
"marginality.pstructure",
"mat.ar1",
"mat.ar2",
"mat.ar3",
"mat.arma",
"mat.banded",
"mat.cor",
"mat.corg",
"mat.dirprod",
"mat.dirsum",
"mat.exp",
"mat.gau",
"mat.ginv",
"mat.I",
"mat.J",
"mat.ma1",
"mat.ma2",
"mat.ncssvar",
"mat.random",
"mat.sar",
"mat.sar2",
"mat.Vpred",
"mat.Vpredicts",
"mpone",
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"porthogonalize.list",
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"print.projector",
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"set.daeTolerance",
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"summary.p2canon",
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"tukey.1df",
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"Conv"
],
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},
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],
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},
{
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"title": "Data for an experiment to investigate nitrogen response of 3 oats varieties",
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},
{
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"Trellis",
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"Score"
],
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{
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{
"name": "SPLGrass.dat",
"title": "Data for an experiment to investigate the effects of grazing patterns on pasture composition",
"object": "SPLGrass.dat",
"file": "SPLGrass.dat.rda",
"class": [
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"fields": [
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"SubColumns",
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"_help": [
{
"page": "dae-package",
"title": "Functions Useful in the Design and ANOVA of Experiments",
"topics": [
"dae-package",
"dae"
]
},
{
"page": "ABC.Interact.dat",
"title": "Randomly generated set of values indexed by three factors",
"topics": [
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]
},
{
"page": "as.data.frame.pstructure",
"title": "Coerces a pstructure.object to a data.frame.",
"topics": [
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]
},
{
"page": "as.numfac",
"title": "Convert a factor to a numeric vector, possibly centering or scaling the values",
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},
{
"page": "BIBDWheat.dat",
"title": "Data for a balanced incomplete block experiment",
"topics": [
"BIBDWheat.dat"
]
},
{
"page": "blockboundaryPlot",
"title": "This function plots a block boundary on a plot produced by 'designPlot'.",
"topics": [
"blockboundaryPlot"
]
},
{
"page": "Cabinet1.des",
"title": "A design for one of the growth cabinets in an experiment with 50 lines and 4 harvests",
"topics": [
"Cabinet1.des"
]
},
{
"page": "Casuarina.dat",
"title": "Data for an experiment with rows and columns from Williams (2002)",
"topics": [
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},
{
"page": "correct.degfree",
"title": "Check the degrees of freedom in an object of class projector",
"topics": [
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},
{
"page": "dae-deprecated",
"title": "Deprecated Functions in Package dae",
"topics": [
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"blockboundary.plot",
"dae-deprecated",
"design.plot",
"proj2.decomp",
"proj2.ops",
"projs.canon",
"projs.structure"
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},
{
"page": "daeTips",
"title": "The intermittent, randomly-presented, startup tips.",
"topics": [
"daeTips"
]
},
{
"page": "decomp.relate",
"title": "Examines the relationship between the eigenvectors for two decompositions",
"topics": [
"decomp.relate"
]
},
{
"page": "degfree",
"title": "Degrees of freedom extraction and replacement",
"topics": [
"degfree",
"degfree<-"
]
},
{
"page": "designAmeasures",
"title": "Calculates the average variance of pairwise differences from the variance matrix for predictions",
"topics": [
"designAmeasures"
]
},
{
"page": "designAnatomy",
"title": "Given the layout for a design, obtain its anatomy via the canonical analysis of its projectors to show the confounding and aliasing inherent in the design.",
"topics": [
"designAnatomy"
]
},
{
"page": "designBlocksGGPlot",
"title": "Adds block boundaries to a plot produced by 'designGGPlot'.",
"topics": [
"designBlocksGGPlot"
]
},
{
"page": "designGGPlot",
"title": "Plots labels on two-way grids of coloured cells using 'ggplot2' to represent an experimental design",
"topics": [
"designGGPlot"
]
},
{
"page": "designLatinSqrSys",
"title": "Generate a systematic plan for a Latin Square design",
"topics": [
"designLatinSqrSys"
]
},
{
"page": "designPlot",
"title": "A graphical representation of an experimental design using labels stored in a matrix.",
"topics": [
"designPlot"
]
},
{
"page": "designPlotlabels",
"title": "Plots labels on a two-way grid using 'ggplot2'",
"topics": [
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]
},
{
"page": "designRandomize",
"title": "Randomize allocated to recipient factors to produce a layout for an experiment",
"topics": [
"designRandomize"
]
},
{
"page": "designTwophaseAnatomies",
"title": "Given the layout for a design and three structure formulae, obtain the anatomies for the (i) two-phase, (ii) first-phase, (iii) cross-phase, treatments, and (iv) combined-units designs.",
"topics": [
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},
{
"page": "detect.diff",
"title": "Computes the detectable difference for an experiment",
"topics": [
"detect.diff"
]
},
{
"page": "efficiencies",
"title": "Extracts the canonical efficiency factors from a 'pcanon.object' or a 'p2canon.object'.",
"topics": [
"efficiencies",
"efficiencies.p2canon",
"efficiencies.pcanon"
]
},
{
"page": "efficiency.criteria",
"title": "Computes efficiency criteria from a set of efficiency factors",
"topics": [
"efficiency.criteria"
]
},
{
"page": "elements",
"title": "Extract the elements of an array specified by the subscripts",
"topics": [
"elements"
]
},
{
"page": "Exp249.munit.des",
"title": "Systematic, main-unit design for an experiment to be run in a greenhouse",
"topics": [
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]
},
{
"page": "extab",
"title": "Expands the values in table to a vector",
"topics": [
"extab"
]
},
{
"page": "fac.ar1mat",
"title": "forms the ar1 correlation matrix for a (generalized) factor",
"topics": [
"fac.ar1mat"
]
},
{
"page": "fac.combine",
"title": "Combines several factors into one",
"topics": [
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]
},
{
"page": "fac.divide",
"title": "Divides a factor into several separate factors",
"topics": [
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]
},
{
"page": "fac.gen",
"title": "Generate all combinations of several factors and, optionally, replicate them",
"topics": [
"fac.gen"
]
},
{
"page": "fac.genfactors",
"title": "Generate all combinations of the levels of the supplied factors, without replication",
"topics": [
"fac.genfactors"
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},
{
"page": "fac.match",
"title": "Match, for each combination of a set of columns in 'x', the row that has the same combination in 'table'",
"topics": [
"fac.match"
]
},
{
"page": "fac.meanop",
"title": "computes the projection matrix that produces means",
"topics": [
"fac.meanop"
]
},
{
"page": "fac.multinested",
"title": "Creates several factors, one for each level of the nesting factor and each of whose values are either generated within those of a level of the nesting factor or using the values of the nested factor within the levels of the nesting factor.",
"topics": [
"fac.multinested"
]
},
{
"page": "fac.nested",
"title": "creates a factor, the nested factor, whose values are generated within those of the factor nesting.fac",
"topics": [
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]
},
{
"page": "fac.recast",
"title": "Recasts a factor by modifying the values in the factor vector and/or the levels attribute, possibly combining some levels into a single level.",
"topics": [
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},
{
"page": "fac.recode",
"title": "Recodes factor 'levels' using values in a vector. The values in the vector do not have to be unique.",
"topics": [
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{
"page": "fac.split",
"title": "Splits a factor whose levels consist of several delimited strings into several factors",
"topics": [
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},
{
"page": "fac.sumop",
"title": "computes the summation matrix that produces sums corresponding to a (generalized) factor",
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"fac.sumop"
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},
{
"page": "fac.uncombine",
"title": "Cleaves a single factor, each of whose levels has delimited strings, into several factors using the separated strings.",
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]
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{
"page": "fac.uselogical",
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{
"page": "fac.vcmat",
"title": "forms the variance matrix for the variance component of a (generalized) factor",
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{
"page": "Fac4Proc.dat",
"title": "Data for a 2^4 factorial experiment",
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},
{
"page": "fitted.aovlist",
"title": "Extract the fitted values for a fitted model from an aovlist object",
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"fitted.aovlist"
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},
{
"page": "fitted.errors",
"title": "Extract the fitted values for a fitted model",
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]
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{
"page": "get.daeRNGkind",
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{
"page": "get.daeTolerance",
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{
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{
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{
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{
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{
"page": "LatticeSquare_t49.des",
"title": "A Lattice square design for 49 treatments",
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{
"page": "makeLevsPadNums",
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{
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{
"page": "mat.ar2",
"title": "Forms an ar2 correlation matrix",
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{
"page": "mat.ar3",
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{
"page": "mat.arma",
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{
"page": "mat.banded",
"title": "Form a banded matrix from a vector of values",
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{
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{
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{
"page": "mat.dirprod",
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{
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{
"page": "mat.exp",
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{
"page": "mat.gau",
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{
"page": "mat.ginv",
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{
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{
"page": "mat.ma1",
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{
"page": "mat.ma2",
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"page": "mat.ncssvar",
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{
"page": "projector",
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"projector"
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{
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{
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"Sensory3PhaseShort.dat"
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{
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"page": "summary.p2canon",
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